Evaluation of Antagonistic Activity of Endophytic Bacteria from Dayak Onion Against Ganoderma boninense

Authors

DOI:

https://doi.org/10.47352/bioactivities.2963-654X.239

Keywords:

Bacillus subtilis, biocontrol, dayak onion, endophytic bacteria, Ganoderma boninense

Abstract

Basal stem rot (BSR) is one of the key contributors to the decline in palm oil production in Indonesia. BSR is caused by the pathogenic plant fungus Ganoderma boninense. Currently, the control of G. boninense growth relies on systemic fungicides. However, systemic fungicides have negative impacts as they can harm natural soil microorganisms. Biocontrol agents present an environmentally friendly alternative for G. boninense management. The objective of this research was to select and identify endophytic bacterial isolates from Dayak onion [Eleutherine bulbosa (Mill.) Urb.] with antagonistic activity against G. boninense. The investigation was initiated with the isolation of 34 endophytic bacterial isolates and G. boninense isolate. The hemolytic capabilities of endophytic bacterial isolates were evaluated on blood agar media. Antagonism assessments were conducted through the dual-culture method, and the inhibition of G. boninense was measured using the percentage inhibition of radial growth (PIRG). The endophytic bacteria exhibiting the highest PIRG values were identified through molecular analysis based on the 16S rRNA gene sequence. Results revealed that 27 isolates demonstrated no ability to hydrolyze blood agar (gamma hemolysis) indicating no pathogenicity. Isolate CED9 demonstrated the highest PIRG value at 70.26%. Genomic identification based on the 16S rRNA gene sequence confirmed that isolate CED9 was classified as Bacillus subtilis. The identification of biocontrol agents from Dayak onion represents valuable information and a potential arsenal for future strategies in mitigating (BSR) disease.

References

[1] J. Salimon, N. Salih, and E. Yousif. (2012). "Industrial development and applications of plant oils and their biobased oleochemicals". Arabian Journal of Chemistry. 5 (2): 135-145. 10.1016/j.arabjc.2010.08.007.

DOI: https://doi.org/10.1016/j.arabjc.2010.08.007

[2] J. Pirker, A. Mosnier, F. Kraxner, P. Havlík, and M. Obersteiner. (2016). "What are the limits to oil palm expansion?". Global Environmental Change. 40 73-81. 10.1016/j.gloenvcha.2016.06.007.

DOI: https://doi.org/10.1016/j.gloenvcha.2016.06.007

[3] L. Naher, U. K. Yusuf, A. Ismail, S. G. Tan, and M. M. A. Mondal. (2013). "Ecological status of Ganoderma and basal stem rot disease of oil palms (Elaeis guineensis Jacq.)". Australian Journal of Crop Science. 7 (11): 1723-1727.

[4] K. P. Chong, J. Dayou, and A. Alexander. (2017). In: "Detection and Control of Ganoderma boninense in Oil Palm Crop, (SpringerBriefs in Agriculture, ch. Chapter 4. ". 21-30. 10.1007/978-3-319-54969-9_4.

DOI: https://doi.org/10.1007/978-3-319-54969-9_4

[5] M. Giovannetti, A. Turrini, C. Sbrana, P. Strani, L. Avio, and B. Pietrangeli. (2006). "Mycorrhizal fungi in ecotoxicological studies: Soil impact of fungicides, insecticides and herbicides". Prevention Today. 2 (1-2): 47-62.

[6] R. Lahlali, S. Ezrari, N. Radouane, J. Kenfaoui, Q. Esmaeel, H. El Hamss, Z. Belabess, and E. A. Barka. (2022). "Biological Control of Plant Pathogens: A Global Perspective". Microorganisms. 10 (3). 10.3390/microorganisms10030596.

DOI: https://doi.org/10.3390/microorganisms10030596

[7] D. Haryadi. (2019). "The Potential Of Endophytic Trichoderma From Oil Palm (Elaeis Guineensis Jacq.) Roots Of North Sumatra, Indonesia Against Ganoderma Boninense". Journal of Oil Palm Research.  10.21894/jopr.2019.0049.

DOI: https://doi.org/10.21894/jopr.2019.0049

[8] A. Susanto, P. S. Sudharto, and R. Y. Purba. (2005). "Enhancing biological control of basal stem rot disease (Ganoderma boninense) in oil palm plantations". Mycopathologia. 159 (1): 153-7. 10.1007/s11046-004-4438-0.

DOI: https://doi.org/10.1007/s11046-004-4438-0

[9] Y. Siddiqui, A. Surendran, R. R. M. Paterson, A. Ali, and K. Ahmad. (2021). "Current strategies and perspectives in detection and control of basal stem rot of oil palm". Saudi Journal of Biological Sciences. 28 (5): 2840-2849. 10.1016/j.sjbs.2021.02.016.

DOI: https://doi.org/10.1016/j.sjbs.2021.02.016

[10] F. Puspita, Hadiwiyono, S. H. Poromorto, and D. I. Roslim. (2019). "The application of different Bacillus subtilis contained formula as bio fungicide tablet to control Ganoderma boninense in oil palm nurseries". IOP Conference Series: Earth and Environmental Science. 250. 10.1088/1755-1315/250/1/012052.

DOI: https://doi.org/10.1088/1755-1315/250/1/012052

[11] A. Irma, A. Meryandini, and B. Rupaedah. (2018). "Biofungicide Producing Bacteria: an In Vitro Inhibitor of Ganoderma boninense". HAYATI Journal of Biosciences. 25 (4). 10.4308/hjb.25.4.151.

DOI: https://doi.org/10.4308/hjb.25.4.151

[12] K. P. Chong, J. A. Gansau, and P. H. Lim. (2019). "Biocontrol of basal stem rot pathogen Ganoderma boninense by Pseudomonas aeruginosa". Bangladesh Journal of Botany. 48 (2): 209-215. 10.3329/bjb.v48i2.47494.

DOI: https://doi.org/10.3329/bjb.v48i2.47494

[13] S. A. Anggita, A. Munif, A. A. Nawangsih, and R. Tryono. (2020). "The endophytic bacteria of oil palm and areca nut are beneficial as antagonist of Ganoderma boninense and potential as plant growth promoter". IOP Conference Series: Earth and Environmental Science. 457 (1). 10.1088/1755-1315/457/1/012055.

DOI: https://doi.org/10.1088/1755-1315/457/1/012055

[14] L. Padhi and S. K. Panda. (2015). "Antibacterial activity of Eleutherine bulbosa against multidrug-resistant bacteria". Journal of Acute Medicine. 5 (3): 53-61. 10.1016/j.jacme.2015.05.004.

DOI: https://doi.org/10.1016/j.jacme.2015.05.004

[15] Y. K. Mohanta, L. Padhi, and S. K. Panda. (2014). "Antifungal activity of Eleutherine bulbosa bulb against mycelial fungus". Journal of Agricultural Technology. 10 (5): 1165-1171.

[16] A. Rizali, N. Laili Aziza, and N. Sari. (2021). "Antagonistic Activities of Endophytic Fungi Isolated from Eleutherine palmifolia Flower". Pakistan Journal of Biological Sciences. 24 (10): 1015-1021. 10.3923/pjbs.2021.1015.1021.

DOI: https://doi.org/10.3923/pjbs.2021.1015.1021

[17] F. Naibaho, P. Ebrry Dwi, L. Neneng, and D. Panjaitan. (2023). "Isolasi Bakteri Endofit Bawang Dayak (Eleutherine Bulbosa) Dan Uji Antagonisme Terhadap Bakteri Escherichia Coli Dan Staphylococcus aureus". Bioma. 19 (1): 42-51. 10.21009/Bioma19(1).5.

DOI: https://doi.org/10.21009/Bioma19(1).5

[18] E. P. Ramdan, A. Hartono, G. Giyanto, S. H. Hidayat, and W. Widodo. (2023). "The Relationship Between Soil Fertility and Basal Stem Rot Disease in Oil Palm Plantations". AGROSAINSTEK: Jurnal Ilmu dan Teknologi Pertanian. 7 (1): 32-39. 10.33019/agrosainstek.v7i1.384.

DOI: https://doi.org/10.33019/agrosainstek.v7i1.384

[19] N. O. Devi, R. K. Tombisana Devi, M. Debbarma, M. Hajong, and S. Thokchom. (2022). "Effect of endophytic Bacillus and arbuscular mycorrhiza fungi (AMF) against Fusarium wilt of tomato caused by Fusarium oxysporum f. sp. lycopersici". Egyptian Journal of Biological Pest Control. 32 (1). 10.1186/s41938-021-00499-y.

DOI: https://doi.org/10.1186/s41938-021-00499-y

[20] J. A. Frank, C. I. Reich, S. Sharma, J. S. Weisbaum, B. A. Wilson, and G. J. Olsen. (2008). "Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes". Applied and Environmental Microbiology. 74 (8): 2461-70. 10.1128/AEM.02272-07.

DOI: https://doi.org/10.1128/AEM.02272-07

[21] K. Tamura, G. Stecher, and S. Kumar. (2021). "MEGA11: Molecular Evolutionary Genetics Analysis Version 11". Molecular Biology and Evolution. 38 (7): 3022-3027. 10.1093/molbev/msab120.

DOI: https://doi.org/10.1093/molbev/msab120

[22] M. Zarei, S. Aminzadeh, A. Ghoroghi, A. A. Motalebi, J. Alikhajeh, and M. Daliri. (2012). "Chitinase isolated from water and soil bacteria in shrimp farming ponds". Iranian Journal of Fisheries Sciences. 11 (4): 911-925.

[23] D. C. Mogrovejo, L. Perini, C. Gostincar, K. Sepcic, M. Turk, J. Ambrozic-Avgustin, F. H. H. Brill, and N. Gunde-Cimerman. (2020). "Prevalence of Antimicrobial Resistance and Hemolytic Phenotypes in Culturable Arctic Bacteria". Frontiers in Microbiology. 11 : 570. 10.3389/fmicb.2020.00570.

DOI: https://doi.org/10.3389/fmicb.2020.00570

[24] M. E. Prastya, A. Suprihadi, and E. Kusdiyantini. (2014). "Eksplorasi Rhizobakteri Indigenous Tanaman Cabai Rawit (Capsicum frustescens Linn.) Dari Pertanian Semi Organik Desa Batur Kabupaten Semarang Sebagai Agen Hayati Pengendali Pertumbuhan Jamur Fusarium oxysporum f.sp capsici". Jurnal Biologi. 3 (3): 18-31.

[25] R. Rahma, T. Kuswinanti, and A. Rosmana. (2019). "Karakterisasi Bakteri Endofit Kitinolitik sebagai Agens Biokontrol Patogen Ganoderma boninense pada Kelapa Sawit [Characterization of Chitinolytic Endophyte Bacteria as Biocontrol Agents of Ganoderma boninense Pathogen on Oil Palm]". Buletin Palma. 20 (1).  10.21082/bp.v20n1.2019.35-43.

DOI: https://doi.org/10.21082/bp.v20n1.2019.35-43

[26] E. K. Perry, L. A. Meirelles, and D. K. Newman. (2022). "From the soil to the clinic: the impact of microbial secondary metabolites on antibiotic tolerance and resistance". Nature Reviews Microbiology. 20 (3): 129-142. 10.1038/s41579-021-00620-w.

DOI: https://doi.org/10.1038/s41579-021-00620-w

[27] H. Wang, R. Liu, M. P. You, M. J. Barbetti, and Y. Chen. (2021). "Pathogen Biocontrol Using Plant Growth-Promoting Bacteria (PGPR): Role of Bacterial Diversity". Microorganisms. 9 (9). 10.3390/microorganisms9091988.

DOI: https://doi.org/10.3390/microorganisms9091988

[28] A. Bonaterra, E. Badosa, N. Daranas, J. Frances, G. Rosello, and E. Montesinos. (2022). "Bacteria as Biological Control Agents of Plant Diseases". Microorganisms. 10 (9).  10.3390/microorganisms10091759.

DOI: https://doi.org/10.3390/microorganisms10091759

[29] Z. Abidin, L. Q. Aini, and A. L. Abadi. (2015). "Pengaruh Bakteri Bacillus sp. DAN Pseudomonas sp. Terhadap Pertumbuhan Jamur Patogen Sclerotium rolfsii Sacc. Penyebab Penyakit Rebah Semai pada Tanaman Kedelai". Jurnal Hama Penyakit Tumbuhan. 3 (1): 1-10.

[30] X. Gao, Y. Gong, Y. Huo, Q. Han, Z. Kang, and L. Huang. (2015). "Endophytic Bacillus subtilis strain E1R-J is a promising biocontrol agent for wheat powdery mildew". BioMed Research International. 2015 : 462645. 10.1155/2015/462645.

DOI: https://doi.org/10.1155/2015/462645

[31] I. N. P. Aryantha and S. Singhalath. (2019). "Anti-fungal substances of Bacillus subtilis against Ganoderma boninense". Malaysian Journal of Microbiology.  10.21161/mjm.191546.

DOI: https://doi.org/10.21161/mjm.191546

[32] A. Hashem, B. Tabassum, and E. Fathi Abd Allah. (2019). "Bacillus subtilis: A plant-growth promoting rhizobacterium that also impacts biotic stress". Saudi Journal of Biological Sciences. 26 (6): 1291-1297. 10.1016/j.sjbs.2019.05.004.

DOI: https://doi.org/10.1016/j.sjbs.2019.05.004

[33] J. Shafi, H. Tian, and M. Ji. (2017). "Bacillusspecies as versatile weapons for plant pathogens: a review". Biotechnology & Biotechnological Equipment. 31 (3): 446-459. 10.1080/13102818.2017.1286950.

DOI: https://doi.org/10.1080/13102818.2017.1286950

[34] X. Q. Wang, D. L. Zhao, L. L. Shen, C. L. Jing, and C. S. Zhang. (2021). In: " Stress Management and Agricultural Sustainability, V. S. Meena Ed.. " Singapore: Springer Singapore. 10.1007/978-981-10-8402-7_9.

DOI: https://doi.org/10.1007/978-981-10-8402-7_9

[35] N. Ajijah, A. Fiodor, A. K. Pandey, A. Rana, and K. Pranaw. (2023). "Plant Growth-Promoting Bacteria (PGPB) with Biofilm-Forming Ability: A Multifaceted Agent for Sustainable Agriculture". Diversity. 15 (1). 10.3390/d15010112.

DOI: https://doi.org/10.3390/d15010112

[36] S. Li, N. Zhang, Z. Zhang, J. Luo, B. Shen, R. Zhang, and Q. Shen. (2012). "Antagonist Bacillus subtilis HJ5 controls Verticillium wilt of cotton by root colonization and biofilm formation". Biology and Fertility of Soils. 49 (3): 295-303. 10.1007/s00374-012-0718-x.

DOI: https://doi.org/10.1007/s00374-012-0718-x

[37] L. Garcia-Gutierrez, H. Zeriouh, D. Romero, J. Cubero, A. de Vicente, and A. Perez-Garcia. (2013). "The antagonistic strain Bacillus subtilis UMAF6639 also confers protection to melon plants against cucurbit powdery mildew by activation of jasmonate- and salicylic acid-dependent defence responses". Microbial Biotechnology. 6 (3): 264-74. 10.1111/1751-7915.12028.

DOI: https://doi.org/10.1111/1751-7915.12028

[38] F. Puspita, Hadiwiyono, S. H. Poromorto, and D. I. Roslim. (2019). "Induced resistance by Bacillus subtilis on oil palm seedling infected by Ganoderma boninense". Biodiversitas Journal of Biological Diversity. 21 (1). 10.13057/biodiv/d210105.

DOI: https://doi.org/10.13057/biodiv/d210105

[39] Suriani and A. Muis. (2016). "Prospek Bacillus subtilis sebagai Agen Pengendali Hayati Patogen Tular Tanah pada Tanaman Jagung". Jurnal Penelitian dan Pengembangan Pertanian. 35 (1):  10.21082/jp3.v35n1.2016.p37-45.

DOI: https://doi.org/10.21082/jp3.v35n1.2016.p37-45

[40] S. Mahapatra, R. Yadav, and W. Ramakrishna. (2022). "Bacillus subtilis impact on plant growth, soil health and environment: Dr. Jekyll and Mr. Hyde". Journal of Applied Microbiology. 132 (5): 3543-3562. 10.1111/jam.15480.

DOI: https://doi.org/10.1111/jam.15480

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Published

2024-12-26

How to Cite

Sinta, D., Norwahyunie, N., Noraini, N., Zulviana, Z., Naibaho, F. G., Wardhana, V. W., … Hartanto, A. (2024). Evaluation of Antagonistic Activity of Endophytic Bacteria from Dayak Onion Against Ganoderma boninense. Bioactivities, 2(2), 120–129. https://doi.org/10.47352/bioactivities.2963-654X.239